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  • Operators Reference
    • Alignment
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Tomviz Documentation
  • Operators Reference

Operators Reference

This section documents all available operators in tomviz. Operators are Python scripts that process tomographic data through various transformations, reconstructions, and analyses.

Total operators: 54

Categories

  • Alignment: 8 operator(s)

  • Filtering: 7 operator(s)

  • Reconstruction: 4 operator(s)

  • Segmentation: 7 operator(s)

  • Transformation: 9 operator(s)

  • Utilities: 19 operator(s)

  • Alignment
    • AutoTiltAxisShiftAlignment
    • PyStackRegImageAlignment
    • AutoCrossCorrelationTiltImageAlignment
    • RotationAlign
    • Shift3D
    • ShiftRotationCenter_tomopy
    • ShiftTiltSeriesRandomly
    • Shift_Stack_Uniformly
  • Filtering
    • AddPoissonNoise
    • DeconvolutionDenoise
    • GaussianFilter
    • GaussianFilterTiltSeries
    • MedianFilter
    • TV_Filter
    • WienerFilter
  • Reconstruction
    • Recon_DFT
    • Recon_DFT_constraint
    • Recon_SIRT
    • Recon_tomopy
  • Segmentation
    • BinaryThreshold
    • LabelObjectAttributes
    • LabelObjectDistanceFromPrincipalAxis
    • LabelObjectPrincipalAxes
    • OtsuMultipleThreshold
    • SegmentParticles
    • SegmentPores
  • Transformation
    • BinaryClose
    • BinaryDilate
    • BinaryErode
    • BinaryMinMaxCurvatureFlow
    • BinaryOpen
    • Pad_Data
    • Resample
    • Rotate3D
    • SwapAxes
  • Utilities
    • AutoCenterOfMassTiltImageAlignment
    • DummyMolecule
    • AutoTiltAxisRotationAlignment
    • AddConstant
    • CircleMask
    • ClipEdges
    • ConnectedComponents
    • PoreSizeDistribution
    • DeleteSlices
    • ElastixRegistration
    • FourierShellCorrelation
    • GenerateTiltSeries
    • ManualManipulation
    • PeronaMalikAnisotropicDiffusion
    • PowerSpectrumDensity
    • RemoveArrays
    • SimilarityMetrics
    • Tortuosity
    • UnsharpMask
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